Below is a list of all the characters that appear in the series Medaka Box.
Hakoniwa Academy
| Zenkichi's Student Council | ||||||
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| Zenkichi Hitoyoshi | Youka Naze | Mukae Emukae | Shori Wanizuka | |||
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| Kudaki Torai | ||||||
| Kendo Club | ||||||
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| Mahibi Moji | Kyousai Usa | Nengi Nakatsu | Konkei Yufuin | |||
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| Mokuyou Tosu | Mari Imari | Zen Ureshino | Seijaku Ibusuki | |||
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| Habataki Hyūga | ||||||
| Athletics Club | ||||||
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| Aria Ariake | Isagi Isahaya | |||||
| Boxing Club | ||||||
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| Boxing Club Captain | Boxing Club Member | |||||
| Judo Club | ||||||
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| Nekomi Nabeshima | Betsuhei Jounan | Judo Club Member With Pigtails |
Judo Club Member With Ahoge | |||
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| Kouki Akune | ||||||
| Swimming Club | ||||||
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| Umumichi Yakushima | Sotsu Tanegashima | Mogana Kikaijima | Rettouroppu Gotou | |||
| Shogi Club | ||||||
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| Sasae Mochibaru | Miri Natayama | |||||
| Public Morals Committee | ||||||
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| Myouri Unzen | Fue Yobuko | Harigane Onigase | Kanraku Kunisaki | |||
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| Rankaku Yoshinogari | Tomojiki Koyu | Kabuto Nomozaki | Tousei Chijiwa | |||
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| Kaishi Yame | ||||||
| Academy Faculty | ||||||
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| Hakama Shiranui | Maguro Kurokami | Messhi Kuguhara | Sanagi Naginoura | |||
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| Richigi Eburi | Shikii Mukueda | |||||
| Thirteen Party | ||||||
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| Oudo Miyakonojou | Mizou Yukuhashi | Itami Koga | Kei Munakata | |||
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| Shigusa Takachiho | ||||||
| Plus Six | ||||||
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| Gunki Itoshima | Otome Yunomae | Hamaya Hyakuchou | Yutori Chikuzen | |||
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| Yamami Tsurumisaki | Shoko Kamimine | |||||
| Other Class 13 Students | ||||||
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| Myouga Unzen | Garaharu Ushibuka | Royal Hirado | Kenri Noogata | |||
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| Sanou Tsushima | Unou Tsushima | Kuudou Hinokage | Gorgeous Hirado | |||
| Class -13 | ||||||
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| Misogi Kumagawa | Hansode Shiranui | Gagamaru Chougasaki | Shibuki Shibushi | |||
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| Shikiri Mukueda | ||||||
| Not Equals | ||||||
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| Najimi Ajimu | Hanten Shiranui | |||||
| Election Management Committee | ||||||
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| Kiruko Tachiarai | Tokemichi Choujabaru | |||||
| Committee Chairmen | ||||||
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| Yabumi Juunichou | Aoki Aka | Konomi Mera | Kuroudo Iizuka | |||
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| Tsue Kamimutsuro | Uzume Megusuno | |||||
| Other Students | ||||||
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| Urushi Akizuki | Hisshuu Kanoya | Kenna Yatsushiro | Kizashi Yuubaru | |||
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| Tanzaku Aso | Mokkin Team | Orchestra Club Captain | Hitomi Hitoyoshi | |||
Middle School Students
| Candidate Student Council | ||||||
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| Suishou Kibougaoka | Ima Takarabe | Kiki Kikitsu | Tsugiha Yojirou | |||
| Other Middle Schoolers | ||||||
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| Tatarou Kamoike | Yuimu Hagoromo | Shouki Soo | Kuromi Arouta | |||
Kurokami Group
| Head Family | ||||||
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| Medaka Kurokami | Kajiki Kurokami | Nashi Kurokami | Hato Tsurubami | |||
| Tsurubami Family | ||||||
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| Kamome Tsurubami | Fukurou Tsurubami | |||||
| Medaka Kurokami's Suitors | ||||||
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| Kakegae Yuzuriha | Mogura Kugurugi | Joutou Kotobuki | Momo Momozono | |||
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| Namanie Nienami | Sui Kanaino | |||||
| Gekka Hyoujin Kai | ||||||
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| Bukiko Udou | ||||||
| Shiranui Village | ||||||
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| Obi | Iihiko Shishime | |||||
| Suitor Doubles | ||||||
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| Kairai Kugurugi | Shinkirou Kotobuki | Genjitsu Momozono | Sakugo Nienami | |||
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| Kariteru Kanaino | Gizou Yuzuriha | |||||
Suisou Academy
| Jakago's Student Council | ||||||
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| Aki Jakago | Iya Renpei | Usa Hannyaji | Kae Sakanoue | |||
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| Tou Kejukuri | ||||||
| Other Students | ||||||
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| Uchi Teppou | Mei Utsubogi | Sumi Kakuremino | Sude Kakuremino | |||
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| Kushi Yakeishi | Fude Ezumachi | |||||
Miscellaneous
| Kiyoterae | ||||||
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| Saki Sukinasaki | Jyuujika Hachiningatake | Zomeki Furousan | ||||
| Yojirou's Fantasies | ||||||
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| Dianne | Great Demon King War-Gold | |||||
| Other Characters | ||||||
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| Ifu Mifune | Mogami | |||||
Pilot Exclusive
| Pilot Characters | ||||||
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| Akasaka | Judo Club Captain | Fat Judo Club Member |
Skinny Judo Club Member | |||
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| Beppu | ||||||